PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009202-PA
Common NameOsI_09276
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 431aa    MW: 43263.8 Da    PI: 6.1236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009202-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-082512891255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  BGIOSGA009202-PA 251 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 289
                       9*****************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-12222298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.792239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7250294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6251289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-12251299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-9251293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQPNARQMHD GGGGGQDDFF DQMLSTLPAV WSELGSGKPA WDLTAGAVGG GGGASDDHSA  60
AAFDDSALLA SRLRQHQIDG GGDKPIMLQL SDLHRHHGLA AGDDSGGAAG FLPLSLFADR  120
SQDDIDAAFK SPNGARGDHA LYNGFGAAGM HGAAAMQPPP FGQGGSMPAQ SFGGGAAASG  180
GGGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERVYH SPTTFPFSPP  240
FFIASMPCCL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  300
GGASAVAPLV ANMSSESNGN GNATSSSGNG EAANGSSNGD NNGGGTLRVT EQQVAKLMEE  360
DMGSAMQYLQ GKGLCLMPIS LATAISSATS SSLLPRTGGG AGGSLHEGGN GTSPPLVNGT  420
ATGCDDAGRK Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.849006e-95leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG94e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLA2XAJ40.0A2XAJ4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA009202-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-47LJRHL1-like 3